Browsing Interdisciplinary & Smart Design by Title

Now showing items 1-15 of 15

    • A scalable solution for finding overlaps between sequences using map-reduce 

      Haj Rachid, Maan; Malluhi, Qutaibah M. ( The International Society for Computers and Their Applications (ISCA) , 2016 , Conference Paper)
      The overlap stage of a string graph-based assembler is considered one of the most time- and space-consuming stages in any de novo overlap-based assembler. This is due to the huge output of the next-generation sequencing ...

    • Adopting formal verification and model-based testing techniques for validating a blockchain-based healthcare records sharing system 

      Jabbar, Rateb; Krichen, Moez; Fetais, Noora; Barkaoui, Kamel ( SciTePress , 2020 , Conference Paper)
      The Electronic Health Records (EHR) sharing system is the modern tool for delivering efficient healthcare to patients. Its functions include tracking of therapies, monitoring of the treatment effectiveness, prediction of ...

    • Assessing the effects of data selection and representation on the development of reliable E. coli sigma 70 promoter region predictors 

      Abbas, Mostafa M.; Mohie-Eldin, Mostafa M.; El-Manzalawy, Yasser ( Public Library of Science , 2015 , Article)
      As the number of sequenced bacterial genomes increases, the need for rapid and reliable tools for the annotation of functional elements (e.g., transcriptional regulatory elements) becomes more desirable. Promoters are the ...

    • Bringing Coordination Languages Back to the Future Using Blockchain Smart Contracts 

      Hammoudeh, Mohammad; Adebisi, Bamidele; Unal, Devrim; Laouid, Abdelkader ( Association for Computing Machinery , 2021 , Conference Paper)
      This paper presents a blockchain extension of the run-time Sensing as a Service SOA (3SOA) approach presented in [5]. 3SOA defines a practical approach for implementing service-oriented Internet of Things (IoT) using ...

    • FastRNABindR: Fast and Accurate Prediction of Protein-RNA Interface Residues 

      EL-Manzalawy, Yasser; Abbas, Mostafa; Malluhi, Qutaibah; Honavar, Vasant ( Public Library of Science (PLoS) , 2016 , Article)
      A wide range of biological processes, including regulation of gene expression, protein synthesis, and replication and assembly of many viruses are mediated by RNA-protein interactions. However, experimental determination ...

    • A Practical and Scalable Tool to Find Overlaps between Sequences 

      Rachid, Maan Haj; Malluhi, Qutaibah ( Hindawi , 2015 , Article)
      The evolution of the next generation sequencing technology increases the demand for efficient solutions, in terms of space and time, for several bioinformatics problems. This paper presents a practical and easy-to-implement ...

    • Privacy preserving computation in cloud using noise-free fully homomorphic encryption (FHE) schemes 

      Wang, Yongge; Malluhi, Qutaibah M. ( Springer Verlag , 2016 , Conference Paper)
      With the wide adoption of cloud computing paradigm, it is important to develop appropriate techniques to protect client data privacy in the cloud. Encryption is one of the major techniques that could be used to achieve ...

    • Similarity Group-by Operators for Multi-Dimensional Relational Data 

      Tang, Mingjie; Tahboub, Ruby Y.; Aref, Walid G.; Atallah, Mikhail J.; Malluhi, Qutaibah M.; ... more authors ( IEEE Computer Society , 2016 , Conference Paper)
      The SQL group-by operator plays an important role in summarizing and aggregating large datasets in a data analytics stack. While the standard group-by operator, which is based on equality, is useful in several applications, ...

    • Skyline Discovery and Composition of Multi-Cloud Mashup Services 

      Zhang, Fan; Hwang, Kai; Khan, Samee U.; Malluhi, Qutaibah M. ( Institute of Electrical and Electronics Engineers , 2016 , Article)
      A cloud mashup is composed of multiple services with shared datasets and integrated functionalities. For example, the elastic compute cloud (EC2) provided by Amazon Web Service (AWS), the authentication and authorization ...

    • Smoking induced salivary microbiome dysbiosis and is correlated with lipid biomarkers 

      Mohammed, Layla I.; Razali, Rozaimi; Zakaria, Zain Zaki; Benslimane, Fatiha M.; Cyprian, Farhan; ... more authors ( Springer Nature , 2024 , Article)
      Background: The oral microbiome plays an essential role in maintaining oral homeostasis and health; smoking significantly affects it, leading to microbial dysbiosis. The study aims to investigate changes in the oral ...

    • The similarity-aware relational intersect database operator 

      Al Marri, Wadha J.; Malluhi, Qutaibah; Ouzzani, Mourad; Tang, Mingjie; Aref, Walid G. ( Springer International Publishing , 2014 , Conference Paper)
      Identifying similarities in large datasets is an essential operation in many applications such as bioinformatics, pattern recognition, and data integration. To make the underlying database system similarity-aware, the core ...

    • Towards robust autonomous driving systems through adversarial test set generation 

      Unal, Devrim; Catak, Ferhat Ozgur; Houkan, Mohammad Talal; Mudassir, Mohammed; Hammoudeh, Mohammad ( ISA - Instrumentation, Systems, and Automation Society , 2023 , Article)
      Correct environmental perception of objects on the road is vital for the safety of autonomous driving. Making appropriate decisions by the autonomous driving algorithm could be hindered by data perturbations and more ...

    • Using Sparse Matrices to Prevent Information Leakage in Cloud Computing 

      Khan K.; Shaheen M.; Wang Y. ( Institute of Electrical and Electronics Engineers Inc. , 2018 , Conference Paper)
      Cloud computing represents the promise of outsourcing of scientific computing such as matrix multiplication. However, this can introduce new vulnerabilities such as information leakage. Cloud server intentionally or ...

    • Using the Sadakane compressed suffix tree to solve the all-pairs suffix-prefix problem 

      Rachid, Maan Haj; Malluhi, Qutaibah; Abouelhoda, Mohamed ( Hindawi , 2014 , Article)
      The all-pairs suffix-prefix matching problem is a basic problem in string processing. It has an application in the de novo genome assembly task, which is one of the major bioinformatics problems. Due to the large size of ...

    • Virtual reality for ambulance simulation environment 

      Halabi, O.; Salahuddin, T.; Karkar, A.G.; Alinier, G. ( Springer , 2022 , Article)
      Simulations are beneficial in evaluating clinicians' empirical competencies through practical skills, prioritizing, and decision-making as part of patient care scenarios generally run in a full-scale physical context. ...