KINDI Center for Computing Research: Recent submissions
Now showing items 241-250 of 250
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Dynamic security metrics for measuring the effectiveness of moving target defense techniques
( Elsevier Ltd , 2018 , Article)Moving Target Defense (MTD) utilizes granularity, flexibility and elasticity properties of emerging networking technologies in order to continuously change the attack surface. There are many different MTD techniques proposed ... -
Robotic probe positioning system for structural health monitoring
( Institute of Electrical and Electronics Engineers Inc. , 2018 , Conference)Structural health Monitoring (SHM) is a very critical component for sustainable civil and mechanical structures in modern urban settings. The sky-scrappers and huge bridges in modern metropolis today are essential aspects ... -
A Practical and Scalable Tool to Find Overlaps between Sequences
( Hindawi , 2015 , Article)The evolution of the next generation sequencing technology increases the demand for efficient solutions, in terms of space and time, for several bioinformatics problems. This paper presents a practical and easy-to-implement ... -
FastRNABindR: Fast and Accurate Prediction of Protein-RNA Interface Residues
( Public Library of Science (PLoS) , 2016 , Article)A wide range of biological processes, including regulation of gene expression, protein synthesis, and replication and assembly of many viruses are mediated by RNA-protein interactions. However, experimental determination ... -
Empowering users of cloud computing on data confidentiality
( IEEE , 2014 , Conference)Cloud networking is an integral part of interconnected data centres operated in cloud environment. Cloud users heavily rely on cloud networking to transmit to and receive data from data centres. In this context, we explore ... -
Using the Sadakane compressed suffix tree to solve the all-pairs suffix-prefix problem
( Hindawi , 2014 , Article)The all-pairs suffix-prefix matching problem is a basic problem in string processing. It has an application in the de novo genome assembly task, which is one of the major bioinformatics problems. Due to the large size of ... -
The similarity-aware relational intersect database operator
( Springer International Publishing , 2014 , Conference)Identifying similarities in large datasets is an essential operation in many applications such as bioinformatics, pattern recognition, and data integration. To make the underlying database system similarity-aware, the core ... -
Assessing the effects of data selection and representation on the development of reliable E. coli sigma 70 promoter region predictors
( Public Library of Science , 2015 , Article)As the number of sequenced bacterial genomes increases, the need for rapid and reliable tools for the annotation of functional elements (e.g., transcriptional regulatory elements) becomes more desirable. Promoters are the ... -
Parallelizing exact motif finding algorithms on multi-core
( Springer Science+Business Media , 2014 , Article)The motif finding problem is one of the important and challenging problems in bioinformatics. A variety of sequential algorithms have been proposed to find exact motifs, but the running time is still not suitable due to ... -
CloudFlow: A data-aware programming model for cloud workflow applications on modern HPC systems
( Elsevier , 2015 , Article)Traditional High-Performance Computing (HPC) based big-data applications are usually constrained by having to move large amount of data to compute facilities for real-time processing purpose. Modern HPC systems, represented ...
