Browsing by Subject "Bioinformatics"
Now showing items 1-11 of 11
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A resource provisioning framework for bioinformatics applications in multi-cloud environments
( Elsevier , 2018 , Article)The significant advancement in Next Generation Sequencing (NGS) have enabled the generation of several gigabytes of raw data in a single sequencing run. This amount of raw data introduces new scalability challenges in ... -
A review of bioinformatics tools and web servers in different microarray platforms used in cancer research
( Elsevier , 2022 , Book chapter)Over the past decade, conventional lab work strategies have gradually shifted from being limited to a laboratory setting towards a bioinformatics era to help manage and process the vast amounts of data generated by omics ... -
A scalable solution for finding overlaps between sequences using map-reduce
( The International Society for Computers and Their Applications (ISCA) , 2016 , Conference Paper)The overlap stage of a string graph-based assembler is considered one of the most time- and space-consuming stages in any de novo overlap-based assembler. This is due to the huge output of the next-generation sequencing ... -
Bioinformatic analysis of human opn3 alternative promoters associated with cancer
( Natural Sciences Publishing Co. , 2016 , Article)In this bioinformatics study we analyzed the functional motifs and structural features of regulatory regions of OPN3, a member of the guanine nucleotide-binding protein (G protein)-coupled receptor super-family, which is ... -
Editorial: Bioinformatics and biostatistics applications in tobacco smoking research
( Frontiers Media S.A. , 2018 , Article)[No abstract available] -
Evaluation of combined genome assemblies: A case study with fungal genomes
( Springer , 2015 , Conference Paper)The rapid advances in genome sequencing leads to the generation of huge amount of data in a single sequencing experiment. Several genome assemblers with different objectives were developed to process these genomic data. ... -
Features Ranking Techniques for Single Nucleotide Polymorphism Data
(2017 , Master Thesis)Identifying biomarkers like single nucleotide polymorphisms (SNPs) is an important topic in biomedical applications. Such SNPs can be associated with an individual’s metabolism of drugs, which make these SNPs targets for ... -
Integrated datasets of proteomic and metabolomic biomarkers to predict its impacts on comorbidities of type 2 diabetes mellitus
( Dove Medical Press , 2020 , Article)© 2020 Cheema et al. Objective: The objective of the current study is to accomplish a relative exploration of the biological roles of differentially dysregulated genes (DRGs) in type 2 diabetes mellitus (T2DM). The study ... -
Lipid transfer proteins (Ltps)- structure, diversity and roles beyond antimicrobial activity
( MDPI , 2021 , Article Review)Lipid transfer proteins (LTPs) are among the most promising plant-exclusive antimicrobial peptides (AMPs). They figure among the most challenging AMPs from the point of view of their structural diversity, functions and ... -
Segmentation of Tumor Regions in Microscopic Images of Breast Cancer Tissue
(2016 , Master Thesis)Nowadays, advances in the domain of digital pathology gave the means to replace the old optical microscopes by the Whole Slide Imaging (WSI) scanners. These scanners enable pathologists viewing conventional tissue slides ... -
Time-Frequency Signal Analysis and Processing: A Comprehensive Reference
( Elsevier Inc. , 2015 , Book)Time-Frequency Signal Analysis and Processing (TFSAP) is a collection of theory, techniques and algorithms used for the analysis and processing of non-stationary signals, as found in a wide range of applications including ...