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Assessing the effects of data selection and representation on the development of reliable E. coli sigma 70 promoter region predictors
(
Public Library of Science
, 2015 , Article)
As the number of sequenced bacterial genomes increases, the need for rapid and reliable tools for the annotation of functional elements (e.g., transcriptional regulatory elements) becomes more desirable. Promoters are the ...
Evaluation of combined genome assemblies: A case study with fungal genomes
(
Springer
, 2015 , Conference Paper)
The rapid advances in genome sequencing leads to the generation of huge amount of data in a single sequencing experiment. Several genome assemblers with different objectives were developed to process these genomic data. ...
Parallelizing exact motif finding algorithms on multi-core
(
Springer Science+Business Media
, 2014 , Article)
The motif finding problem is one of the important and challenging problems in bioinformatics. A variety of sequential algorithms have been proposed to find exact motifs, but the running time is still not suitable due to ...